Epigenomic and Transcriptomic Atlas of Human Craniofacial Development

Epigenomic Project now published in Cell Reports! https://doi.org/10.1016/j.celrep.2018.03.129

Epigenomic Project Original preprint on biorxiv.org: http://biorxiv.org/content/early/2017/05/10/135368

Transcriptomic Project preprint on biorxiv.org: https://doi.org/10.1101/2022.02.28.482338

02-28-2022          All chromatin state annotations have been converted to hg38 coordinates. RNA-Seq data from Yankee et al. 2022 (forthcoming) are now available. See links below for RNA-Seq data exploration apps.

Video Tutorial for UCSC Track Hubs

Individual Links

Load our data into the UCSC genome browser using track hub functionality (all data in hg19):

  • Human Craniofacial ChIP-Seq and Chromatin State Segmentations: hub file

Jump to your favorite gene in a new browser window (Please email for more gene-specific links):

All Figures and Tables are available on FigShare.

Imputed Signal Tracks and Chromatin State Segmentations are available on GEO: GSE97752

Mouse 4C-Seq data are available on GEO: GSE98251


Open our data in HiGlass

Gini Gene Functional Enrichments

Bulk RNA-Seq Data Explorer

Single Nucleus CS20 RNA-Seq Data Explorer


3D PCA for All Craniofacial Chromatin Marks

3D PCA for H3K27ac at Enhancers in Craniofacial and Roadmap Samples

Self Organizing Map