Data

Epigenomic Atlas of Craniofacial Development

Now published in Cell Reports! https://doi.org/10.1016/j.celrep.2018.03.129

Original preprint on biorxiv.org: http://biorxiv.org/content/early/2017/05/10/135368


Load our data into the UCSC genome browser using track hub functionality (all data in hg19):

  • Human Craniofacial ChIP-Seq and Chromatin State Segmentations: hub file
  • View Human Craniofacial ChIP-Seq data at 8q24 here
  • View Human Craniofacial ChIP-Seq data at ABCA4 here
  • View Human Craniofacial ChIP-Seq data at ALX3 here
  • View Human Craniofacial ChIP-Seq data at ALX4 here
  • View Human Craniofacial ChIP-Seq data at ARHGAP29 here
  • View Human Craniofacial ChIP-Seq data at BMP4 here
  • View Human Craniofacial ChIP-Seq data at DLX1 here
  • View Human Craniofacial ChIP-Seq data at FGFR2 here
  • View Human Craniofacial ChIP-Seq data at FOXE1 here
  • View Human Craniofacial ChIP-Seq data at IRF6 here
  • View Human Craniofacial ChIP-Seq data at MAFB here
  • View Human Craniofacial ChIP-Seq data at MSX1 here
  • View Human Craniofacial ChIP-Seq data at MSX2 here
  • View Human Craniofacial ChIP-Seq data at NOG here
  • View Human Craniofacial ChIP-Seq data at NTN1 here
  • View Human Craniofacial ChIP-Seq data at PAX7 here
  • View Human Craniofacial ChIP-Seq data at PRDM16 here
  • View Human Craniofacial ChIP-Seq data at PTCH1 here
  • View Human Craniofacial ChIP-Seq data at TWIST1 here
  • View Human Craniofacial ChIP-Seq data at TWIST2 here
  • View Human Craniofacial ChIP-Seq data at TXNDC16 here
  • View Human Craniofacial ChIP-Seq data at VAX1 here
  • View Orthologous 4C-Seq Interaction data at the HoxA cluster in human here
  • View 4C-Seq Interaction data at the HoxA cluster in mouse here

All Figures and Tables are available on FigShare.

Imputed Signal Tracks and Chromatin State Segmentations are available on GEO: GSE97752

Mouse 4C-Seq data are available on GEO: GSE98251

Explore Self-Organizing Map of H3K27ac Data

Explore 3D PCA for All Marks in Craniofacial Samples

Explore 3D PCA for H3K27ac in Craniofacial and Roadmap Epigenome Samples